Pumping is NEVER an indication of supply amount you could not respond well to the pump even if it's only on one side that doesn't respond well. If you're nursing and pumping and baby likes that side more then baby is draining that side and you can't pump what's not there. Your supply is most likely totally fine. If baby is happy and healthy there is no reason to worry. My left side produces on average 3oz more then my right side. It's common to have a more active side even if baby doesn't have a preference
You're getting just what he needs. When I first started breastfeeding my right boob had a better flow than the left but he loved the left boob. Now I'm just getting over having too much in both.